Despite great achievements in algorithm design for Personalized Federated Learning (PFL), research on the theoretical analysis of generalization is still in its early stages. Some theoretical results have investigated the generalization performance of personalized models under the problem setting and hypothesis in convex conditions, which can not reflect the real iteration performance during non-convex training. To further understand the real performance from a generalization perspective, we propose the first algorithm-dependent generalization analysis with uniform stability for the typical PFL method, Partial Model Personalization, on smooth and non-convex objectives. Specifically, we decompose the generalization errors into aggregation errors and fine-tuning errors, then creatively establish a generalization analysis framework corresponding to the gradient estimation process of the personalized training. This framework builds up the bridge among PFL, FL and Pure Local Training for personalized aims in heterogeneous scenarios, which clearly demonstrates the effectiveness of PFL from the generalization perspective. Moreover, we demonstrate the impact of trivial factors like learning steps, stepsizes and communication topologies and obtain the excess risk analysis with optimization errors for PFL. Promising experiments on CIFAR datasets also corroborate our theoretical insights. Our code can be seen in https://github.com/YingqiLiu1999/Understanding-the-Stability-based-Generalization-of-Personalized-Federated-Learning.